Data Systems Engineer

Berkeley Lab’s Joint Genome Institute (JGI) is looking for a Data Systems Engineer to join their Data Science and Informatics Department!

 

In this exciting role, you will design, implement and operate a data infrastructure, serving the needs of production users and scientists. This position will collaborate with users to develop systems, connect the use of data to publications, and better understand connectivity to improve our tools for scientific data exploration and discovery.  This is a unique opportunity to shape a systems architecture from the ground up and establish process and culture to enable scientists to solve harder problems, faster.

 

What You Will Do:

• Develop and maintain software to automate processes for data associations and reduce the need for manual intervention.
• Identify, investigate, and resolve complex systems infrastructure issues through collaboration with diverse teams across the Lab.
• Present solutions to audiences within and outside Berkeley Lab.

 

What is Required:

• A Bachelor’s Degree (or equivalent knowledge/training) in Computer Science, Computer Engineering or a related field and a minimum of 8 years of relevant experience or an equivalent combination of education and experience.
• Proficiency in automation and/or systems programming (e.g., Python/Ruby/Perl, GoLang, C, Rust, etc.)
• Proficiency with natural language processing, knowledge graph construction, and algorithm development.
• Experience with the development of nomenclature and taxonomy databases, with a focus on genomic data.
• Experience with modern software development practices including APIs and “DevOps” technologies.
• Demonstrated knowledge of object-relational mapping and text and data mining.
• Excellent oral and written communication skills including the ability to conduct analysis and present information.
• Strong interpersonal skills including the ability to work in a diverse team environment.

 

What We Prefer:

• Demonstrated experience with operating infrastructure in a life science environment.

 

Notes:

• For full consideration, please apply with a resume by October 26, 2022.
• This is a full time, exempt from overtime pay (monthly paid), 2 year (benefits eligible) Term appointment with the possibility of renewal up to a maximum of 5 years total or conversion to Career appointment based upon satisfactory job performance, continuing availability of funds, and ongoing operational needs.
• Salary is commensurate with experience.
• This position may be subject to a background check. Any convictions will be evaluated to determine if they directly relate to the responsibilities and requirements of the position. Having a conviction history will not automatically disqualify an applicant from being considered for employment.
• This position is eligible for a hybrid work schedule – a combination of teleworking and performing work on site at Lawrence Berkeley National Lab, 1 Cyclotron Road, Berkeley, CA. Work schedules are dependent on business needs. Individuals working a hybrid schedule must reside within 150 miles of Berkeley Lab.

 

Learn About Us:

Berkeley Lab (LBNL) addresses the world’s most urgent scientific challenges by advancing sustainable energy, protecting human health, creating new materials, and revealing the origin and fate of the universe. Founded in 1931, Berkeley Lab’s scientific expertise has been recognized with 16 Nobel prizes. The University of California manages Berkeley Lab for the U.S. Department of Energy’s Office of Science.

 

The JGI ’s mission is to provide the global research community with access to the most advanced integrative genome science capabilities in support of the DOE”s research mission to solve the world’s evolving energy and environmental challenges. The JGI supports projects in genome sequencing, synthesis, transcriptomics, metabolomics, and natural products in plants, fungi, algae, and microorganisms.

 

Working at Berkeley Lab has many rewards including a competitive compensation program, excellent health and welfare programs, a retirement program that is second to none, and outstanding development opportunities. To view information about the many rewards that are offered at Berkeley Lab- Click Here .

 

Based on University of California Policy – SARS-CoV-2 (COVID-19) Vaccination Program and U.S Federal Government requirements, Berkeley Lab requires that all members of our community obtain the COVID-19 vaccine as soon as they are eligible. As a condition of employment at Berkeley Lab, all Covered Individuals must Participate in the COVID-19 Vaccination Program by providing proof of Full Vaccination or submitting a request for Exception or Deferral. Visit covid.lbl.gov for more information.

 

Berkeley Lab is committed to Inclusion, Diversity, Equity and Accountability (IDEA) and strives to continue building community with these shared values and commitments.

 

Berkeley Lab is an Equal Opportunity and Affirmative Action Employer. We heartily welcome applications from women, minorities, veterans, and all who would contribute to the Lab’s mission of leading scientific discovery, inclusion, and professionalism. In support of our diverse global community, all qualified applicants will be considered for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, age, or protected veteran status.

 

Equal Opportunity and IDEA Information Links:

Know your rights, click here for the supplement: “Equal Employment Opportunity is the Law” and the Pay Transparency Nondiscrimination Provision under 41 CFR 60-1.4.